Finally talked to them today. It is going to need a new transmission, clutch, timing belt, front seals, water pump, coolant hoses, rear muffler, and theres more that he said could wait and the car would be fine. He thinks that at some point before the car was driven with no transmission fluid. Nothing would surprise me at this point with other things that I have found out about my car, but anyways the estimate is coming to somewhere around $3300. This sucks.