okay, i've done this twice now. you think i would learn....
anyway, you need to open and close the door and also pull the window up.
okay, that doesn't make any sense.
1-start on the outside of your car and close the door
2-watch the window roll up a 1/2"
3-pull the glass up
6-pull glass up
your problem is that when you disconected the battery, you may have left the driver window down and the car thinks that the window is "up".
hope that helps.